clang-16: error: no such file or directory: 'Welcome'

By -

Compilation of some R packages with R CMD build or install runs into a common clang error as follows;

clang-16: error: no such file or directory: 'Welcome'
clang-16: error: no such file or directory: 'at'
clang-16: error: no such file or directory: 'Thu'
clang-16: error: no such file or directory: 'Apr'
clang-16: error: no such file or directory: '20'
clang-16: error: no such file or directory: '19:30:11'
clang-16: error: no such file or directory: '2023'

A line, Welcome at Thu Apr 20 19:30:06 2023 appears at the very begging of R CMD build or install output as follows;

R CMD build dada2

Welcome at Thu Apr 20 19:30:06 2023
* checking for file ‘dada2/DESCRIPTION’ ... OK
* preparing ‘dada2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------

Welcome at Thu Apr 20 19:30:07 2023
* installing *source* package ‘dada2’ ...
** using staged installation
** libs

I am using M1 Mac with following;

sw_vers
ProductName:        macOS
ProductVersion:     13.3.1
BuildVersion:       22E261

R.version
               _                           
platform       aarch64-apple-darwin20      
arch           aarch64                     
os             darwin20                    
system         aarch64, darwin20           
status                                     
major          4                           
minor          2.2                         
year           2022                        
month          10                          
day            31                          
svn rev        83211                       
language       R                           
version.string R version 4.2.2 (2022-10-31)
nickname       Innocent and Trusting

I am not sure this is a M1 Mac specific issue but happens occasionally with M1 Mac I'd really appreciate any pointers to address this issue.



Comments

Post a Comment

Popular posts from this blog

Spring Elasticsearch Operations

By -
Elasticsearch Operations Spring Data Elasticsearch uses two interfaces to define the operations that can be called against an Elasticsearch index. These are ElasticsearchOperations and ReactiveElasticsearchOperations. Whereas the first is used with the classic synchronous implementations, the second one uses reactive infrastructure. The default implementations of the interfaces offer: Read/Write mapping support for domain types. A rich query and criteria api. Resource management and Exception translation. ElasticsearchTemplate The ElasticsearchTemplate is an implementation of the ElasticsearchOperations interface using the Transport Client. @Configuration public class TransportClientConfig extends ElasticsearchConfigurationSupport {   @Bean   public Client elasticsearchClient() throws UnknownHostException {                      Settings settings = Settings.builder().put("cluster.name", "elasticsearch")....
Read more

Object oriented programming concepts (OOPs)

By -
Object-oriented programming (OOP) is a programming paradigm based on the concept of "objects". Re-usability is the main concept of Oops. There are few major principles of object-oriented paradigm. If any programming Language supports this principles that programming language called Object-oriented programming. Below are object oriented programming concepts : 1. Object        Read More about Object     http://theprogrammersfirst.blogspot.in/2016/07/java-object-concept.html
Read more

Spring Boot and Vaadin : Filtering rows in Vaadin Grid

By -
Adding a text field for filtering: Start by adding a text field above the grid. Remember, MainView is a VerticalLayout, so you need to add the text field before the grid. MainView.java public class MainView extends VerticalLayout {   private ContactService contactService;   private Grid<Contact> grid = new Grid<>(Contact.class);   private TextField filterText = new TextField(); ①   public MainView(ContactService contactService) {   this.contactService = contactService;   addClassName("list-view");   setSizeFull();   configureFilter(); ②   configureGrid();   add(filterText, grid); ③   updateList();   }   private void configureFilter() {   filterText.setPlaceholder("Filter by name..."); ④   filterText.setClearButtonVisible(true); ⑤   filterText.setValueChangeMode(ValueChangeMode.LAZY); ⑥   filterText.addValueChangeListener(e -> updateList()); ⑦   }   // Grid...
Read more