How to get the pairwise difference of all values within uneven categories in R
I found solutions for simple vectors, but is there a way to make all pairwise differences using dplyr or base R for all the elements in a category?
library(tidyverse)
x = 1:10
y = rep(letters[1:5],each=2)
z = rep(1:2,length.out =10)
df = data.frame(x,y, z)
df = rbind(df,c(11,"e",3))
df$verif = paste0(df$y,df$z)
df$x = as.numeric(df$x)
df %>%
group_by(y) %>%
summarise(Diff = abs(x - lag(x)))
gives:
`summarise()` regrouping output by 'y' (override with `.groups` argument)
# A tibble: 11 x 2
# Groups: y [5]
y Diff
<chr> <dbl>
1 a NA
2 a 1
3 b NA
4 b 1
5 c NA
6 c 1
7 d NA
8 d 1
9 e NA
10 e 1
11 e 1
In this example, it's only using the previous value in the data frame, therefore missing pairwise differences (look at 9, 10 and 11 for group "e" ).
Is there a way to get all the pairwise differences in each category? Keeping track of the pairwise differences would be useful as well (e.g., e1 with e2 = 1, e2 with e3 is = 1 and e1 with e3 is =2)
I tired the outer() function but wasn't able to make it work as well as the dist() function.
I continued to try and found this:
my.df=df %>%
group_by(y) %>%
summarise(Diff = combn(x,2,diff))
my.df
# A tibble: 7 x 2
# Groups: y [5]
y Diff
<chr> <dbl>
1 a 1
2 b 1
3 c 1
4 d 1
5 e 1
6 e 2
7 e 1
I just now need to get which pairwise difference was calculated...
Continued again and got this mess:
my.df=df %>%
group_by(y) %>%
summarise(Diff = combn(x,2,diff),
test = combn(verif,2,paste, simplify = FALSE)) %>%
mutate(test2 = paste0(test, collapse = "-"))
my.df
> my.df
# A tibble: 7 x 4
# Groups: y [5]
y Diff test test2
<chr> <dbl> <list> <chr>
1 a 1 <chr [2]> "c(\"a1\", \"a2\")"
2 b 1 <chr [2]> "c(\"b1\", \"b2\")"
3 c 1 <chr [2]> "c(\"c1\", \"c2\")"
4 d 1 <chr [2]> "c(\"d1\", \"d2\")"
5 e 1 <chr [2]> "c(\"e1\", \"e2\")-c(\"e1\", \"e3\")-c(\"e2\", \"e3\")"
6 e 2 <chr [2]> "c(\"e1\", \"e2\")-c(\"e1\", \"e3\")-c(\"e2\", \"e3\")"
7 e 1 <chr [2]> "c(\"e1\", \"e2\")-c(\"e1\", \"e3\")-c(\"e2\", \"e3\")"
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